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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1436046_1436809_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1436046 - 1436809
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATAGCT
Flanking Amino Acid:
VNVVEPSVNTTGVSWTNVNS
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
81.1
0.7
0.8
77.3
31.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
54.9
0.23
2
80.43
41.5

Associated Gene:

Gene:
SECISBP2L
Ensembl Gene ID:
ENSAPLG00000004694
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020322
1423882 - 1450483
26602
ENSAPLT00000004866
1425382 - 1450483
25102