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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14364572_14389702_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14364572 - 14389702
Intron Length:
25131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
GCTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ACATCTTCAAAT
Flanking Amino Acid:
SKKSDDLEQFHSRPYVFLMA
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.4
44
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82.2
0.72
0.9
75.5
38.3
Minor 5ss
37.9
-1.4
2.7
50.5
39.2
Minor BPS
55.3
0.24
1.6
68.89
41.7

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906