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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1437151_1437601_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1437151 - 1437601
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATGC
Flanking Amino Acid:
VLLVDASQQTDFPSDIANKS
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
48.9
-0.1
2
65.35
40.5

Associated Gene:

Gene:
SECISBP2L
Ensembl Gene ID:
ENSAPLG00000004694
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020322
1423882 - 1450483
26602
ENSAPLT00000004866
1425382 - 1450483
25102