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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14389857_14393286_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14389857 - 14393286
Intron Length:
3430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
GCTTCTTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATAAATC
Flanking Amino Acid:
HYPYTYSTMMAHLDILEQNR
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
58.9
45.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
76.9
0.61
0.8
72.7
32
Minor 5ss
34.6
-1.8
3.4
44.5
44.4
Minor BPS
49.1
-0
1.9
58.97
40.2

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906