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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14393432_14401199_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14393432 - 14401199
Intron Length:
7768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
TAACTGTCCACT
Flanking Amino Acid:
LRAGHDISYYKNHYRCSTAA
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
87.8
0.85
0.7
80.6
31.5
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
40
-0.7
2.4
59.44
43.5

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906