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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14404708_14405071_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14404708 - 14405071
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TCTTCCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTCCTTAACA
Flanking Amino Acid:
GNLRKAIQVREFEYDLIMNA
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.9
0.7
0.8
77
30.2
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
91.1
1.29
0.8
91.36
30.2

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906