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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14405159_14406069_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14405159 - 14406069
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTGCTTTGATT
Flanking Amino Acid:
GRTVYDLDEPSHSSPGAPGC
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.5
32.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
76.9
0.6
0.9
71
39.5
Minor 5ss
29.2
-2.4
2.9
35.3
41.5
Minor BPS
66
0.58
1.4
78.01
39.5

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906