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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14412227_14413201_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14412227 - 14413201
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAA
U12 Branch Point Sequence:
TTGGCTCTACCC
Flanking Amino Acid:
KTESPCVGFEDDYESDGEEE
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75.6
35.3
Major BPS
61.6
0.29
1.2
55.4
42
Major PPT
79.7
0.67
0.9
73.5
37
Minor 5ss
39.9
-1.1
2.9
53
44.2
Minor BPS
47.4
-0.2
2
62.23
43.7

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906