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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14413368_14416604_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14413368 - 14416604
Intron Length:
3237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CAGTTCTTAACA
Flanking Amino Acid:
GMEILFTSVQDCLSCKNLDP
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78
0.63
0.9
71.5
38.3
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
72.8
0.71
1.3
71.83
40.4

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906