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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14426886_14447336_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14426886 - 14447336
Intron Length:
20451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTTCTTCATCT
Flanking Amino Acid:
PYSKRHIRTVRAAIEALAAL
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.7
44.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.4
0.75
0.7
76.5
32.1
Minor 5ss
39.7
-1.2
3.2
57.4
46.9
Minor BPS
62.4
0.47
1.8
82.64
38.7

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906