About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14447431_14449776_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14447431 - 14449776
Intron Length:
2346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
LWVLRVCASNVTAGTTLGIN
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.7
0.76
0.9
81.4
36.2
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906