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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14449909_14450409_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14449909 - 14450409
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTACTG
5'SS Class:
major
3'SS Sequence:
TTGCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTCTTCATAATA
Flanking Amino Acid:
LRLLARVGQRDRKFGLKVQK
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
59.4
45.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.8
0.76
0.8
79.4
32.6
Minor 5ss
34.6
-1.8
3.4
48.1
47.4
Minor BPS
60
0.31
1.6
68.44
38.2

Associated Gene:

Gene:
AGBL1
Ensembl Gene ID:
ENSAPLG00000013665
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014262
14320050 - 14470955
150906