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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14487280_14488804_R

Intron Information:

Intron Rank:
137981
Intron Class:
major
Intron Phase:
Intron Coordinates:
14487280 - 14488804
Intron Length:
1525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCACATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
87.1
0.83
0.7
79.6
32.4
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
46.4
-0.1
2
68.67
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021760
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043255
14487219 - 14489543
2325