Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14518331_14519091_R

Intron Information:

Intron Rank:

136277

Intron Class:

major

Intron Phase:

Intron Coordinates:

14518331 - 14519091

Intron Length:

761

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTGGTCTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAATAAT

U12 Branch Point Sequence:

GAAAACTGAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

1.1

76.3

32.7

Major BPS

62.3

0.31

1.3

64.3

39.7

Major PPT

77.7

0.62

0.9

41.4

Minor 5ss

30.1

-2.3

2.7

34.9

41.1

Minor BPS

47.6

-0.1

1.6

53.79

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020734

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044054

14518215 - 14521072

2858