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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14519183_14520404_R

Intron Information:

Intron Rank:
136278
Intron Class:
major
Intron Phase:
Intron Coordinates:
14519183 - 14520404
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GGCTCCTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
87.4
29
Major BPS
69.6
0.49
1
59.5
39
Major PPT
84.6
0.78
0.7
78.9
26.7
Minor 5ss
37.9
-1.4
2.9
52.2
44.4
Minor BPS
62.9
0.4
1.5
66
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020734
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044054
14518215 - 14521072
2858