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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14520584_14520763_R

Intron Information:

Intron Rank:
136279
Intron Class:
major
Intron Phase:
Intron Coordinates:
14520584 - 14520763
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCAACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
70.7
39.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.9
0.49
0.9
66.8
33
Minor 5ss
20.6
-3.4
3.8
29.9
43.2
Minor BPS
50
-0
2
71.58
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020734
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044054
14518215 - 14521072
2858