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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_145381_146172_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145381 - 146172
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTGCATCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCCTGCATC
Flanking Amino Acid:
AMIEPENTPFKSKDYSALPA
Intron Amino Acid Position:
2618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
87
27.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
67.9
0.4
1
58.5
41.9
Minor 5ss
42.7
-0.8
3
60.1
38.5
Minor BPS
63.7
0.41
1.9
79.19
36.3

Associated Gene:

Gene:
DMXL2
Ensembl Gene ID:
ENSAPLG00000008330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038574
136000 - 191755
55756
ENSAPLT00000022556
136006 - 191755
55750
ENSAPLT00000008801
136000 - 191755
55756