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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14568788_14569080_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14568788 - 14569080
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTACTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTCCCTGTACT
Flanking Amino Acid:
KGRGHRSQQSACSASKKRMS
Intron Amino Acid Position:
2656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
80.3
0.68
0.9
77
36.9
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
65.7
0.57
1.8
87.16
37.7

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037410
14568180 - 14765006
196827
ENSAPLT00000033751
14568180 - 14765006
196827
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827