Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14573772_14575920_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14573772 - 14575920

Intron Length:

2149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTAGT

5'SS Class:

major

3'SS Sequence:

CTTCTTCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

TGCTGAATAACC

Flanking Amino Acid:

FDSHQMNASKCGVKDEGDDA

Intron Amino Acid Position:

1081

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

70.8

Major BPS

76.9

0.67

1.2

31.9

Major PPT

82.9

0.74

0.6

81.6

23.5

Minor 5ss

-1.8

2.9

43.2

43.8

Minor BPS

45.9

-0.3

2.2

61.36

43.4

Associated Gene:

Gene:

AKAP13

Ensembl Gene ID:

ENSAPLG00000014139

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048123

14568180 - 14765006

196827

ENSAPLT00000014788

14568180 - 14638408

70229