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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14574738_14575920_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14574738 - 14575920
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TTCTCCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
AGGCTTATAACC
Flanking Amino Acid:
FDSHQMNASKSKQKGGVSSC
Intron Amino Acid Position:
2323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
70.8
41
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
82.5
0.73
0.7
73.9
31.2
Minor 5ss
34
-1.8
2.9
43.2
43.8
Minor BPS
48.4
-0.1
1.6
55.54
36.3

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000037410
14568180 - 14765006
196827
ENSAPLT00000033751
14568180 - 14765006
196827
ENSAPLT00000028370
14568180 - 14765006
196827