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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14579052_14581225_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14579052 - 14581225
Intron Length:
2174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GCATGCTTATAT
Flanking Amino Acid:
SLKNAAGRLKEVQAVLLSDM
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
46.8
-0.1
2.1
62.8
46.6

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028370
14568180 - 14765006
196827
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000014788
14568180 - 14638408
70229
ENSAPLT00000037410
14568180 - 14765006
196827
ENSAPLT00000033751
14568180 - 14765006
196827