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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14582369_14583011_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14582369 - 14583011
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
TCGTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAGAA
U12 Branch Point Sequence:
CTCAATAGAAGT
Flanking Amino Acid:
KRIGDILVNQFSGENAERMK
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
53.4
0.08
1
50.7
34.3
Major PPT
80.1
0.68
0.9
76.9
37.3
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
37.7
-0.8
1.9
51.07
43

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033751
14568180 - 14765006
196827
ENSAPLT00000028370
14568180 - 14765006
196827
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000014788
14568180 - 14638408
70229
ENSAPLT00000037410
14568180 - 14765006
196827