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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1458237_1459020_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1458237 - 1459020
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTACC
5'SS Class:
major
3'SS Sequence:
CATTTCCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TACTTATTCATT
Flanking Amino Acid:
ESLLVQCILDNTIHGRIDQV
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.3
34.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.3
0.68
0.8
78
30.4
Minor 5ss
44.8
-0.6
2.4
55.6
35.3
Minor BPS
48.8
-0
2
69.42
42

Associated Gene:

Gene:
COPS2
Ensembl Gene ID:
ENSAPLG00000004440
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004607
1458092 - 1471410
13319