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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14586064_14586755_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14586064 - 14586755
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGAA
5'SS Class:
major
3'SS Sequence:
ACTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTTCTCTGACA
Flanking Amino Acid:
GCNCRISLPTGSQPKERPRS
Intron Amino Acid Position:
1819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
32.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
80.5
0.69
0.8
73.8
30.5
Minor 5ss
38.2
-1.3
3.1
49.1
47.1
Minor BPS
69.9
0.62
1.6
83.23
30.5

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000037410
14568180 - 14765006
196827
ENSAPLT00000028370
14568180 - 14765006
196827