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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14586064_14587638_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14586064 - 14587638
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTTCTCTGACA
Flanking Amino Acid:
SLPTVTMRNKSSQPKERPRS
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
80.5
0.69
0.8
73.8
30.5
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
69.9
0.62
1.6
83.23
30.5

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033751
14568180 - 14765006
196827
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000014788
14568180 - 14638408
70229