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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14586822_14587638_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14586822 - 14587638
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGGCTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
GGATTAGTGATT
Flanking Amino Acid:
SLPTVTMRNKSGKTYLKRKQ
Intron Amino Acid Position:
1797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
67.7
0.4
1.1
61.4
44.5
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
42.4
-0.5
2.1
57.71
39.1

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000037410
14568180 - 14765006
196827
ENSAPLT00000028370
14568180 - 14765006
196827
ENSAPLT00000048123
14568180 - 14765006
196827