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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14587706_14588788_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14587706 - 14588788
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
TTACAGTGAATT
Flanking Amino Acid:
FASCAKVKMKPQKGMLQAHD
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
45.7
-0.2
2.2
68.6
41.9

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014788
14568180 - 14638408
70229
ENSAPLT00000037410
14568180 - 14765006
196827
ENSAPLT00000033751
14568180 - 14765006
196827
ENSAPLT00000028370
14568180 - 14765006
196827
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827