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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14588857_14592151_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14588857 - 14592151
Intron Length:
3295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TAACTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
PFNKDSYYCANCNAIVHKGC
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.3
0.5
1
68.5
41.6
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033751
14568180 - 14765006
196827
ENSAPLT00000028370
14568180 - 14765006
196827
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000014788
14568180 - 14638408
70229
ENSAPLT00000037410
14568180 - 14765006
196827