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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1459080_1460068_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1459080 - 1460068
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
TRIHIPFISKELNIDVADVE
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.7
85.8
27.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
COPS2
Ensembl Gene ID:
ENSAPLG00000004440
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004607
1458092 - 1471410
13319