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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14598374_14602192_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14598374 - 14602192
Intron Length:
3819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CACTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CATTCTTTCACT
Flanking Amino Acid:
SSSDEEEELDSAPAFGGPAG
Intron Amino Acid Position:
1645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
77.7
0.69
1
81
30.2
Major PPT
80.9
0.69
0.8
72.3
37.4
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
66.5
0.6
1.8
80.6
41.6

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028370
14568180 - 14765006
196827