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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1460152_1462045_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1460152 - 1462045
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTTACA
Flanking Amino Acid:
DDPFIREHIEELLRNIRTQV
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
95
1.01
0.5
90.9
21.2
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
65.1
0.47
1.6
74.12
37.8

Associated Gene:

Gene:
COPS2
Ensembl Gene ID:
ENSAPLG00000004440
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004607
1458092 - 1471410
13319