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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14602319_14607234_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14602319 - 14607234
Intron Length:
4916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
ACCCACTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTGCTGTTAACC
Flanking Amino Acid:
LMSISKPALDTQGRTRPSRR
Intron Amino Acid Position:
1603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.1
0.43
0.9
65
35.3
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
50.6
-0
2.1
62.8
43

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028370
14568180 - 14765006
196827