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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14608764_14617582_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14608764 - 14617582
Intron Length:
8819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTGTCAGGATCT
Flanking Amino Acid:
ATNEAEINQRSYSLEGLAGD
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
81.2
0.7
0.9
77.8
36.7
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
43.3
-0.4
2.4
70.02
46.4

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000014788
14568180 - 14638408
70229