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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14611206_14614436_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14611206 - 14614436
Intron Length:
3231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAGC
5'SS Class:
major
3'SS Sequence:
TTGATGTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCTCTTTTGATG
Flanking Amino Acid:
GIKKPPIHRRSLSWCPSGVQ
Intron Amino Acid Position:
1484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
63.4
41.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.9
0.54
1
65.2
45.4
Minor 5ss
32.1
-2
3.2
43.8
43.5
Minor BPS
49.7
-0.1
1.3
50.19
39

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000033751
14568180 - 14765006
196827
ENSAPLT00000028370
14568180 - 14765006
196827