About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14611206_14617582_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14611206 - 14617582
Intron Length:
6377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGATGTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCTCTTTTGATG
Flanking Amino Acid:
ATNEAEINQRSLSWCPSGVQ
Intron Amino Acid Position:
1466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.9
0.54
1
65.2
45.4
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
49.7
-0.1
1.3
50.19
39

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037410
14568180 - 14765006
196827