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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14617954_14624270_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14617954 - 14624270
Intron Length:
6317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCATTTTAATC
Flanking Amino Acid:
DGMEDLVFGKQPEEEQSACD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.6
40.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.7
77.2
24.7
Minor 5ss
31.4
-2.1
3.1
39
46.4
Minor BPS
66.1
0.49
1.2
69.89
36.2

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028370
14568180 - 14765006
196827
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000014788
14568180 - 14638408
70229
ENSAPLT00000037410
14568180 - 14765006
196827
ENSAPLT00000033751
14568180 - 14765006
196827