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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14628635_14638327_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14628635 - 14638327
Intron Length:
9693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTCTTTGATC
Flanking Amino Acid:
DRTVDVVLLKINRESWCSLE
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
84
0.85
0.9
75
39.9
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
73.7
0.73
1.1
76.89
33.8

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014788
14568180 - 14638408
70229