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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14628635_14659663_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14628635 - 14659663
Intron Length:
31029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTCTTTGATC
Flanking Amino Acid:
PRDSAACEEAINRESWCSLE
Intron Amino Acid Position:
1270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
84
0.85
0.9
75
39.9
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
73.7
0.73
1.1
76.89
33.8

Associated Gene:

Gene:
AKAP13
Ensembl Gene ID:
ENSAPLG00000014139
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033751
14568180 - 14765006
196827
ENSAPLT00000028370
14568180 - 14765006
196827
ENSAPLT00000048123
14568180 - 14765006
196827
ENSAPLT00000018478
14568180 - 14765006
196827
ENSAPLT00000043666
14568180 - 14765006
196827
ENSAPLT00000037410
14568180 - 14765006
196827