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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1464822_1465679_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1464822 - 1465679
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTCATCT
Flanking Amino Acid:
PHPLIMGVIRECGGKMHLRE
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.12
0.8
80.2
30.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
29.2
-2.4
3.8
39.9
46.1
Minor BPS
60
0.39
1.8
79.81
42.6

Associated Gene:

Gene:
COPS2
Ensembl Gene ID:
ENSAPLG00000004440
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004607
1458092 - 1471410
13319