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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1465855_1466756_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1465855 - 1466756
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTA
5'SS Class:
major
3'SS Sequence:
TAATCTATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTACTTAATC
Flanking Amino Acid:
ILRQLHQSCQTDDGEDDLKK
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
75.2
37.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.5
0.39
0.9
59.5
41.1
Minor 5ss
48.2
-0.2
2.8
67.3
43.8
Minor BPS
75.8
0.79
1.4
80.9
33.1

Associated Gene:

Gene:
COPS2
Ensembl Gene ID:
ENSAPLG00000004440
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004607
1458092 - 1471410
13319