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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1467042_1468384_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1467042 - 1468384
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATCA
5'SS Class:
major
3'SS Sequence:
TTTTTTATGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTATAGAATT
Flanking Amino Acid:
ILDYISTSKQMDLLQEFYET
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.5
32.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.5
0.78
0.9
85.7
33.4
Minor 5ss
34.6
-1.8
2.8
40.7
45
Minor BPS
46.9
-0.1
1.8
66.79
37.4

Associated Gene:

Gene:
COPS2
Ensembl Gene ID:
ENSAPLG00000004440
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004607
1458092 - 1471410
13319