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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_146713_147714_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146713 - 147714
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAAGA
5'SS Class:
major
3'SS Sequence:
TCTTTTTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTAGCACAACT
Flanking Amino Acid:
IQEHKDANSYSWALLHLTMV
Intron Amino Acid Position:
2522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.9
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
84
29.9
Minor 5ss
29.2
-2.4
2.6
32.8
41.5
Minor BPS
48.8
-0
2.2
78.41
43.3

Associated Gene:

Gene:
DMXL2
Ensembl Gene ID:
ENSAPLG00000008330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038574
136000 - 191755
55756
ENSAPLT00000022556
136006 - 191755
55750
ENSAPLT00000008801
136000 - 191755
55756