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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1470306_1471380_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1470306 - 1471380
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACAGGCA
5'SS Class:
weak_major
3'SS Sequence:
GTCTTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCTTTTATGT
Flanking Amino Acid:
MKEQVCVDEEEYSEDSNSEP
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.1
53.9
37.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.1
0.61
0.9
73.6
36
Minor 5ss
29.5
-2.3
3.7
37.8
45.1
Minor BPS
49.1
0.01
1.9
69.28
42

Associated Gene:

Gene:
COPS2
Ensembl Gene ID:
ENSAPLG00000004440
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004607
1458092 - 1471410
13319