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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1483210_1484104_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1483210 - 1484104
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
TTGGAATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
TCTTTTGGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
65.3
40.8
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
74.6
0.55
1
70.3
44.5
Minor 5ss
36.5
-1.5
3
45.5
42.6
Minor BPS
48.7
-0
2.1
71.39
40.7

Associated Gene:

Gene:
GALK2
Ensembl Gene ID:
ENSAPLG00000004342
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026113
1482988 - 1537557
54570