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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14840439_14851807_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14840439 - 14851807
Intron Length:
11369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
TGTTACCAAACT
Flanking Amino Acid:
CLSSSNKGMLGLIVYLGMMV
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
76.6
0.6
0.7
68.7
31.7
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
51.2
0.12
2.2
78.85
42.7

Associated Gene:

Gene:
SV2B
Ensembl Gene ID:
ENSAPLG00000014580
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015210
14839546 - 14867651
28106