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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14851989_14852513_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14851989 - 14852513
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATGT
Flanking Amino Acid:
FLFCRLISGLGIGGSLPIVF
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
63.1
43.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
28.8
-2.4
2.8
27.4
36.6
Minor BPS
53.1
0.17
2.1
79.56
42.7

Associated Gene:

Gene:
SV2B
Ensembl Gene ID:
ENSAPLG00000014580
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015210
14839546 - 14867651
28106