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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14852666_14854678_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14852666 - 14854678
Intron Length:
2013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACTGTT
5'SS Class:
major
3'SS Sequence:
TTGCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GTGTCTTCACCT
Flanking Amino Acid:
AMAWSIIPHYGWGFSMGTKY
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
76.5
39.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81.2
0.7
0.9
72.8
42.2
Minor 5ss
44.6
-0.6
3.3
67.5
43.6
Minor BPS
53.8
0.2
1.9
72.67
44.4

Associated Gene:

Gene:
SV2B
Ensembl Gene ID:
ENSAPLG00000014580
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015210
14839546 - 14867651
28106