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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14854813_14855457_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14854813 - 14855457
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTGATGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTTCCTTGATG
Flanking Amino Acid:
MPESPRFLLEMGKHDEAWMI
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
78.3
0.64
1
69.3
45.9
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
82.4
0.88
1.1
82.57
32

Associated Gene:

Gene:
SV2B
Ensembl Gene ID:
ENSAPLG00000014580
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015210
14839546 - 14867651
28106