About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_14855548_14857682_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14855548 - 14857682
Intron Length:
2135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTGGTCCAAATT
Flanking Amino Acid:
AKGEPERVFTVSYIKTPKQV
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.3
29.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
77.7
0.62
0.7
76.7
25.4
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
46.6
-0.1
2
67.37
44.2

Associated Gene:

Gene:
SV2B
Ensembl Gene ID:
ENSAPLG00000014580
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015210
14839546 - 14867651
28106