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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1486391_1491989_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1486391 - 1491989
Intron Length:
5599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GAAACCTCAAGG
Flanking Amino Acid:
LQLANTNSLYLDFSASINDI
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
88.6
0.87
0.7
83.9
31
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
46.2
-0.4
1.9
47.91
44.3

Associated Gene:

Gene:
GALK2
Ensembl Gene ID:
ENSAPLG00000004342
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004482
1482686 - 1537557
54872
ENSAPLT00000026113
1482988 - 1537557
54570
ENSAPLT00000021501
1482686 - 1537557
54872